Computational Drug Discovery

Innovative Solutions
for Drug Discovery
& Molecular Science

Accelerate your research with cutting-edge computational services tailored for pharmaceutical, biotechnology, and academic sectors. From molecular dynamics to insilico drug design — we drive breakthroughs at the molecular level.

150+ Research Projects
15+ Industry Partners
8+ Years Experience

Innovating Drug Discovery
Through Simulation

At Moleculytic, we specialize in advancing drug discovery through cutting-edge molecular dynamics simulations, focusing on the intricate behavior of proteins to accelerate scientific breakthroughs.

Our interdisciplinary team combines expertise in computational chemistry, biophysics, and machine learning to deliver insights that bridge the gap between in silico prediction and real-world therapeutic outcomes.

Trusted by leading pharmaceutical companies, biotech startups, and academic institutions worldwide, we bring precision and innovation to every research challenge — from hit identification to lead optimization.

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Scientific Rigor

All simulations validated against experimental data with peer-reviewed methodologies.

High Performance

GPU-accelerated computing infrastructure enabling microsecond-scale simulations.

Expert Team

Ph.D. scientists and computational chemists with decades of combined experience.

Trusted Results

150+ successful research projects across pharma, biotech, and academia.

Comprehensive Computational
Research Services

From early-stage hit discovery to lead optimization, we provide the full computational spectrum.

01

Molecular Dynamics Simulation

Advanced atomistic and coarse-grained simulations of protein behavior, membrane systems, and biomolecular complexes. Providing nanosecond to microsecond timescale insights for drug-receptor interactions.

GROMACS AMBER NAMD CHARMM
02

Protein Structure Analysis

In-depth characterization of protein folding, conformational dynamics, binding site identification, and allosteric networks. Leveraging AlphaFold integration for structure prediction and validation.

AlphaFold PyMOL Rosetta
03

Insilico Drug Design

Structure-based and ligand-based drug design workflows including pharmacophore modeling, scaffold hopping, and de novo design using generative AI models tailored for your target class.

Schrödinger AutoDock RDKit
04

Virtual Screening

High-throughput docking campaigns against large compound libraries (millions of compounds) to rapidly identify promising hit molecules against validated drug targets with precision ranking.

Glide Vina GOLD DOCK
05

Binding Free Energy Calculations

Rigorous FEP and MM-GBSA/PBSA calculations to rank and prioritize compounds by predicted binding affinity. Reliable relative and absolute binding free energy estimates for lead optimization.

FEP+ MM-GBSA Thermodynamic Integration
06

ADMET Prediction

Computational prediction of Absorption, Distribution, Metabolism, Excretion, and Toxicity profiles using AI-powered models to filter compounds early and reduce costly experimental failures.

SwissADME pkCSM ADMETlab
07

Custom Research Solutions

Fully tailored computational workflows designed around your unique research challenges — from custom force field development to multi-scale modelling pipelines and ML-enhanced approaches.

Custom Pipeline ML Integration Consulting
08

Academic & Training Collaborations

We partner with universities and research institutes for joint publications, grant-funded projects, and hands-on workshops in computational drug discovery. Contact us to discuss research collaboration opportunities.

Joint Research Grant Support Workshops Training

Our Research Process

A structured, transparent workflow from initial consultation to final deliverables.

01

Discovery Call

We understand your research objectives, target system, timeline, and specific computational requirements.

02

Protocol Design

Our scientists design a bespoke computational workflow, selecting optimal methods and software for your system.

03

Simulation & Analysis

Execution of simulations on our HPC infrastructure with real-time progress updates and quality checks.

04

Reporting & Handoff

Comprehensive reports with visualizations, raw data, and actionable insights. Full IP transfer to your team.

Explore Our Innovative
Projects in Drug Discovery

Protein Dynamics

Molecular Interaction Simulations

Investigating conformational changes in kinase families and GPCRs through enhanced sampling MD simulations, revealing cryptic allosteric binding pockets for novel drug targeting.

Learn More
Drug Discovery

Advancing Therapeutic Solutions

End-to-end computational pipeline for antimicrobial resistance targets — from virtual screening of 10M+ compounds to FEP-validated leads with experimental confirmation partnership.

Discover
Innovation

AI-Enhanced Lead Optimization

Integrating graph neural networks with classical MD to predict binding affinity and ADMET properties simultaneously, reducing optimization cycles from months to days.

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AI-Powered Drug Design
& Molecular Intelligence

We integrate state-of-the-art deep learning, generative models, and graph neural networks into every stage of the drug discovery pipeline — transforming months of iteration into days of in silico insight.

Generative AI

De Novo Molecule Generation

Diffusion-based and variational autoencoder models generate novel drug-like scaffolds conditioned on target binding pocket geometry. We employ DiffSBDD, TargetDiff, and fragment-growing networks to explore uncharted chemical space.

DiffSBDDTargetDiffREINVENTJunction Tree VAE
Graph Neural Networks

GNN-Based Binding Affinity Prediction

Graph Attention Networks encode molecular topology and 3D conformation to predict binding free energies, IC₅₀ values, and selectivity profiles — outperforming classical QSAR across diverse target classes.

SchNetDimeNet++EGNNPaiNN
Large Language Models

Chemistry Foundation Models

Transformer-based chemical language models fine-tuned on target-specific activity data for retrosynthesis prediction, reaction outcome forecasting, and property-guided lead elaboration at scale.

ChemBERTaChemformerMolBERTUni-Mol
Structural AI

AlphaFold-Integrated Workflows

Combining AlphaFold2/3 and ESMFold predictions with MD relaxation and cryptic pocket detection to unlock undruggable targets — particularly intrinsically disordered proteins and novel GPCR families.

AlphaFold 3ESMFoldRFdiffusionFPocket
Multimodal AI

AI-Augmented ADMET Profiling

Ensemble deep learning models trained on curated pharmacokinetic datasets predict hERG cardiotoxicity, CYP inhibition, BBB permeability, and metabolic stability — integrated into virtual screening pipelines for early filtering.

ADMETlab 3.0DeepToxpkCSM-DLChemprop
Reinforcement Learning

RL-Driven Lead Optimisation

RL agents trained with multi-objective reward signals (potency, selectivity, synthetic accessibility, ADMET) iteratively refine lead scaffolds — navigating vast chemical space with goal-directed molecular evolution.

REINVENT 4GuacaMolGENTRLMolDQN

Start Your Research
Journey With Us

Let's Discuss Your
Research Challenges

Whether you're a pharmaceutical company seeking computational support, a biotech startup exploring new targets, or an academic group needing simulation expertise — we're here to help.

Website
moleculytic.com
Response Time
Within 24 business hours
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